MolNFT v1 · #28308 · protein

The 1.8 ångström crystal structure of the ycac gene product from escherichia COLI reveals an octameric hydrolase of unknown specificity

1YAC: “The 1.8 ångström crystal structure of the ycac gene product from escherichia COLI reveals an octameric…”. X-ray diffraction, 3 pockets (best druggability 0.66). MolNFT v1 #28308 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 1YAC
Type: protein
Length: 408 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ycac gene product
UniProt: P21367
Pockets: 3 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ycac gene product	protein	204	50% helix, 17% strand	P21367

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.66	0.92	22	empty
2	71	0.63	0.91	20	empty
3	187	0.53	0.79	26	empty

Interfaces

1 interface between chains.

A–B · 1014 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

1YAC · The 1.8 ångström crystal structure of the ycac gene product from escherichia COLI reveals… · the same entry in another collection · chain A against A, TM-score 1.00
P21367 · AlphaFold monomer V2.0 prediction for probable hydrolase ycac (P21367) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21367
Elsewhere: RCSB PDB 1YAC · PDBe 1YAC · UniProt P21367

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