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The 1.8 ångström crystal structure of the ycac gene product from escherichia COLI reveals an octameric hydrolase of unknown specificity

Analyse The 1.8 ångström crystal structure of the ycac gene product from escherichia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YAC
Type: protein
Length: 408 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ycac gene product
UniProt: P21367
Pockets: 3 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ycac gene product	protein	204	50% helix, 17% strand	P21367

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.66	0.92	22	empty
2	71	0.63	0.91	20	empty
3	187	0.53	0.79	26	empty

Interfaces

1 interface between chains.

A–B · 1014 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

1YAC · The 1.8 ångström crystal structure of the ycac gene product from escherichia COLI reveals… · the same entry in another collection · chain A against A, TM-score 1.00
P21367 · AlphaFold monomer V2.0 prediction for probable hydrolase ycac (P21367) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21367
Elsewhere: RCSB PDB 1YAC · PDBe 1YAC · UniProt P21367

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