MolNFT v1 · #2785 · protein
Deoxy RHB1.0 (recombinant hemoglobin)
1C7B · Protein (deoxyhemoglobin (alpha chain)): “Deoxy RHB1.0 (recombinant hemoglobin)”. X-ray diffraction, 1 ligand (HEM), 9 pockets (best druggability 0.80). MolNFT v1 #2785 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1C7B
- Type
- protein
- Length
- 574 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (deoxyhemoglobin (alpha chain)); Protein (deoxyhemoglobin (beta chain))
- UniProt
- P69905, P68871
- Ligands
- HEM
- Pockets
- 9 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Protein (deoxyhemoglobin (alpha chain)) | protein | 141 | 78% helix, 0% strand | P69905 |
| B, D | Protein (deoxyhemoglobin (beta chain)) | protein | 146 | 77% helix, 0% strand | P68871 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 767 | 0.80 | 0.83 | 67 | empty |
| 2 | 244 | 0.73 | 0.87 | 28 | HEM |
| 3 | 258 | 0.73 | 0.86 | 31 | HEM |
| 4 | 229 | 0.73 | 0.87 | 26 | HEM |
| 5 | 274 | 0.72 | 0.86 | 29 | HEM |
Interfaces
5 interfaces between chains.
- C–D · 867 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 849 Ų buried · 9 hydrogen bonds · protein-protein
- A–D · 712 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 708 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 363 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 1C7B · Deoxy RHB1.0 (recombinant hemoglobin) · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69905
- Every structure of UniProt P68871
- Elsewhere: RCSB PDB 1C7B · PDBe 1C7B · UniProt P69905 · UniProt P68871
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.