MolNFT v1 · #27695 · protein
The crystal structure of a novel, latent dihydroorotase from aquifex aeolicus at 1.7 a resolution
1XRF: “The crystal structure of a novel, latent dihydroorotase from aquifex aeolicus at 1.7 a resolution”. X-ray diffraction, 2 ligands (ZN, SO4), 1 pocket (best druggability 0.56). MolNFT v1 #27695 on GenesisL1: 3D structure, binding…
- PDB
- 1XRF
- Type
- protein
- Length
- 363 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dihydroorotase
- EC
- 3.5.2.3
- UniProt
- O66990
- Ligands
- ZN, SO4
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dihydroorotase (EC 3.5.2.3) | protein | 363 | 33% helix, 26% strand | O66990 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 209 | 0.56 | 0.80 | 34 | empty |
Compared structures
- 1XRF · The Crystal Structure of a Novel, Latent Dihydroorotase from Aquifex aeolicus at 1.7 A… · the same entry in another collection · chain A against A, TM-score 1.00
- O66990 · AlphaFold monomer V2.0 prediction for dihydroorotase (O66990) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O66990
- Elsewhere: RCSB PDB 1XRF · PDBe 1XRF · UniProt O66990
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