MolNFT v1 · #27401 · protein
Anabaena sensory rhodopsin
1XIO: “Anabaena sensory rhodopsin”. X-ray diffraction, 2 ligands (PEE, RET), 1 pocket (best druggability 0.80). MolNFT v1 #27401 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1XIO
- Type
- protein
- Length
- 217 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Anabaena sensory rhodopsin
- UniProt
- Q8YSC4
- Ligands
- PEE, RET
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 82% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Anabaena sensory rhodopsin | protein | 217 | 82% helix, 0% strand | Q8YSC4 |
Ligands and binding sites
- PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine · ligand · 13 copies · chains A
- RET · Retinal · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.80 | 0.97 | 23 | RET |
Modifications
Observed in the structure: 1 cofactor (retinal Schiff base).
Compared structures
- 1XIO · Anabaena sensory rhodopsin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YSC4
- Elsewhere: RCSB PDB 1XIO · PDBe 1XIO · UniProt Q8YSC4
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