MolNFT v1 · #27358 · protein
NADH oxidase /nitrite reductase from pyrococcus furiosus pfu-1140779- 001
1XHC: “NADH oxidase /nitrite reductase from pyrococcus furiosus pfu-1140779- 001”. X-ray diffraction, 1 ligand (FAD), 2 pockets (best druggability 0.78). MolNFT v1 #27358 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1XHC
- Type
- protein
- Length
- 346 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NADH oxidase /nitrite reductase
- UniProt
- Q8U1K9
- Ligands
- FAD
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH oxidase /nitrite reductase | protein | 346 | 28% helix, 31% strand | Q8U1K9 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 867 | 0.78 | 0.81 | 101 | FAD |
| 2 | 58 | 0.35 | 0.78 | 12 | empty |
Compared structures
- 1XHC · NADH oxidase /nitrite reductase from Pyrococcus furiosus Pfu-1140779-001 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U1K9
- Elsewhere: RCSB PDB 1XHC · PDBe 1XHC · UniProt Q8U1K9
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