MolNFT v1 · #27180 · protein

Structure of a putative fructokinase from bacillus subtilis

1XC3: “Structure of a putative fructokinase from bacillus subtilis”. X-ray diffraction, 2 ligands (PT, ZN), 2 pockets (best druggability 0.67). MolNFT v1 #27180 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1XC3
Type: protein
Length: 295 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative fructokinase
EC: 2.7.1.4
UniProt: O05510
Ligands: PT, ZN
Pockets: 2 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative fructokinase (EC 2.7.1.4)	protein	295	39% helix, 20% strand	O05510

Ligands and binding sites

PT · Platinum (II) ion · metal · 2 copies · chains A
ZN · Zinc ion · metal · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	587	0.67	0.77	63	GOL
2	119	0.38	0.74	22	empty

Compared structures

1XC3 · Structure of a Putative Fructokinase from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
O05510 · AlphaFold monomer V2.0 prediction for putative fructokinase (O05510) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O05510
Elsewhere: RCSB PDB 1XC3 · PDBe 1XC3 · UniProt O05510

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