MolNFT v1 · #26932 · protein
Solution structure of ring finger in ring finger protein 38
1X4J: “Solution structure of ring finger in ring finger protein 38”. Solution nmr, 1 ligand (ZN), 1 pocket (best druggability 0.42). MolNFT v1 #26932 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1X4J
- Type
- protein
- Length
- 75 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ring finger protein 38
- UniProt
- Q9H0F5
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.42
Structure
solution nmr · 1 distinct chain · 11% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ring finger protein 38 | protein | 75 | 11% helix, 23% strand | Q9H0F5 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.42 | 0.80 | 17 | empty |
Compared structures
- 1X4J · Solution structure of RING finger in RING finger protein 38 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H0F5 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase RNF38 (Q9H0F5) · a predicted model of the same protein · chain A against A, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H0F5
- Elsewhere: RCSB PDB 1X4J · PDBe 1X4J · UniProt Q9H0F5
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