MolNFT v1 · #2663 · protein
T4 phage beta-glucosyltransferase: substrate binding and proposed catalytic mechanism
1C3J: “T4 phage beta-glucosyltransferase: substrate binding and proposed catalytic mechanism”. X-ray diffraction, 1 ligand (UDP), 3 pockets (best druggability 0.79). MolNFT v1 #2663 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1C3J
- Type
- protein
- Length
- 333 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-glucosyltransferase
- EC
- 2.4.1.27
- UniProt
- P04547
- Ligands
- UDP
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-glucosyltransferase (EC 2.4.1.27) | protein | 333 | 39% helix, 18% strand | P04547 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 514 | 0.79 | 0.86 | 48 | UDP |
| 2 | 138 | 0.52 | 0.80 | 22 | empty |
| 3 | 112 | 0.43 | 0.77 | 24 | empty |
Compared structures
- 1C3J · T4 phage beta-glucosyltransferase: substrate binding and proposed catalytic mechanism · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04547
- Elsewhere: RCSB PDB 1C3J · PDBe 1C3J · UniProt P04547
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