MolNFT v1 · #26350 · protein

Crystal structure of alkaline serine protease kp-43 from bacillus sp. ksm-KP43 (oxidized form, 1.73 ångström)

1WMF: “Crystal structure of alkaline serine protease kp-43 from bacillus sp. ksm-KP43 (oxidized form, 1.73 ångström)”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.33). MolNFT v1 #26350 on GenesisL1: 3D structure…

PDB: 1WMF
Type: protein
Length: 434 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protease
EC: 3.4.21.-
UniProt: Q93UV9
Ligands: CA
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protease (EC 3.4.21.-)	protein	434	21% helix, 25% strand	Q93UV9

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A
DIO · 1,4-diethylene dioxide · additive · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	80	0.33	0.75	23	DIO

Modifications

Observed in the structure: 2 modified (nonstandard).

Compared structures

1WMF · Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (oxidized… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q93UV9
Elsewhere: RCSB PDB 1WMF · PDBe 1WMF · UniProt Q93UV9

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