MolNFT v1 · #26310 · protein

Structure of the thermostable arabinanase

1WL7 · Arabinanase-ts: “Structure of the thermostable arabinanase”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.57). MolNFT v1 #26310 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1WL7
Type: protein
Length: 312 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Arabinanase-ts
EC: 3.2.1.99
Ligands: CA
Pockets: 2 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Arabinanase-ts (EC 3.2.1.99)	protein	312	3% helix, 47% strand	—

Ligands and binding sites

CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	159	0.57	0.81	27	empty
2	52	0.39	0.81	18	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1WL7 · Structure of the thermostable arabinanase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1WL7 · PDBe 1WL7

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