MolNFT v1 · #26102 · protein
Crystal structure of GTP-binding protein TT1341 from thermus thermophilus HB8
1WF3: “Crystal structure of GTP-binding protein TT1341 from thermus thermophilus HB8”. X-ray diffraction, 2 ligands (GNP, MG), 2 pockets (best druggability 0.62). MolNFT v1 #26102 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1WF3
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GTP-binding protein
- UniProt
- Q5SM23
- Ligands
- GNP, MG
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GTP-binding protein | protein | 296 | 40% helix, 24% strand | Q5SM23 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
- MG · Magnesium ion · metal · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 228 | 0.62 | 0.82 | 33 | GOL |
| 2 | 90 | 0.56 | 0.86 | 26 | MG, GNP |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SM23
- Elsewhere: RCSB PDB 1WF3 · PDBe 1WF3 · UniProt Q5SM23
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