MolNFT v1 · #26066 · protein
Crystal structure of ribonuclease
1WDY · 2-5A-dependent ribonuclease: “Crystal structure of ribonuclease”. X-ray diffraction, 1 ligand (25A), 1 pocket (best druggability 0.37). MolNFT v1 #26066 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1WDY
- Type
- protein
- Length
- 285 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2-5A-dependent ribonuclease
- EC
- 3.1.26.-
- UniProt
- Q05823
- Ligands
- 25A
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2-5A-dependent ribonuclease (EC 3.1.26.-) | protein | 285 | 50% helix, 1% strand | Q05823 |
Ligands and binding sites
- 25A · 5'-O-monophosphoryladenylyl(2'->5')adenylyl(2'->5') adenosine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.37 | 0.75 | 18 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05823
- Elsewhere: RCSB PDB 1WDY · PDBe 1WDY · UniProt Q05823
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