MolNFT v1 · #26051 · protein

Crystal structure of TT0907 from thermus thermophilus HB8

1WDI · Hypothetical protein TT0907: “Crystal structure of TT0907 from thermus thermophilus HB8”. X-ray diffraction, 2 pockets (best druggability 0.69). MolNFT v1 #26051 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1WDI
Type: protein
Length: 294 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein TT0907
UniProt: Q72JS5
Pockets: 2 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein TT0907	protein	294	27% helix, 30% strand	Q72JS5

Ligands and binding sites

CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	357	0.69	0.82	55	empty
2	378	0.59	0.76	49	CIT

Compared structures

1WDI · Crystal Structure Of TT0907 From Thermus Thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00
Q72JS5 · AlphaFold monomer V2.0 prediction for S-ADENOSYLMETHIONINE:TRNA… · a predicted model of the same protein · chain A against A, TM-score 0.78

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q72JS5
Elsewhere: RCSB PDB 1WDI · PDBe 1WDI · UniProt Q72JS5

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.