MolNFT v1 · #2556 · protein

Crystal structure of yeast YPD1P

1C02 · Phosphotransferase YPD1P: “Crystal structure of yeast YPD1P”. X-ray diffraction, 3 pockets (best druggability 0.67). MolNFT v1 #2556 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1C02
Type: protein
Length: 332 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphotransferase YPD1P
UniProt: Q07688
Pockets: 3 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 64% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Phosphotransferase YPD1P	protein	166	64% helix, 0% strand	Q07688

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	268	0.67	0.83	24	empty
2	89	0.48	0.82	19	empty
3	94	0.44	0.79	19	empty

Interfaces

1 interface between chains.

A–B · 931 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

1C02 · Crystal structure of yeast YPD1P · the same entry in another collection · chain A against A, TM-score 1.00
Q07688 · AlphaFold monomer V2.0 prediction for phosphorelay intermediate protein YPD1 (Q07688) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q07688
Elsewhere: RCSB PDB 1C02 · PDBe 1C02 · UniProt Q07688

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