UniProt Q07688
Ypd1p (Q07688)
Ypd1p (UniProt Q07688): 16 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 76 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q07688
- Protein
- Ypd1p
- Experimental structures
- 16
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 76 · 10 records with a druggable one
Structures
17 records of Q07688 in the MolNFT archive: 16 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1C02 | Crystal structure of yeast YPD1P | x-ray diffraction | A, B | — | 3 (best 0.67) |
| 1C02 | Crystal structure of yeast YPD1P | x-ray diffraction | A, B | — | 3 (best 0.67) |
| 1C03 | Crystal structure of YPD1P (triclinic form) | x-ray diffraction | A, B, C, D | — | 10 (best 0.69) |
| 1C03 | Crystal structure of YPD1P (triclinic form) | x-ray diffraction | A, B, C, D | — | 10 (best 0.69) |
| 1OXB | Complex between YPD1 and SLN1 response regulator domain in space group P2(1)2(1)2(1) | x-ray diffraction | A | SO4 | 2 (best 0.44) |
| 1OXB | Complex between YPD1 and SLN1 response regulator domain in space group P2(1)2(1)2(1) | x-ray diffraction | A | SO4 | 2 (best 0.44) |
| 1OXK | Complex between YPD1 and SLN1 response regulator domain in space group P3(2) | x-ray diffraction | A, C, E, G, I, K | SO4 | 19 (best 0.78) |
| 1OXK | Complex between YPD1 and SLN1 response regulator domain in space group P3(2) | x-ray diffraction | A, C, E, G, I, K | SO4 | 19 (best 0.78) |
| 1QSP | Crystal structure of the yeast phosphorelay protein YPD1 | x-ray diffraction | A, B | — | 1 (best 0.52) |
| 1QSP | Crystal structure of the yeast phosphorelay protein YPD1 | x-ray diffraction | A, B | — | 1 (best 0.52) |
| 2R25 | Complex of YPD1 and SLN1-R1 with bound Mg2+ and BeF3- | x-ray diffraction | A | BEF | 2 (best 0.37) |
| 2R25 | Complex of YPD1 and SLN1-R1 with bound MG2+ and BEF3- | x-ray diffraction | A | BEF | 2 (best 0.37) |
| 5KBX | Co-crystal structure of the Saccharomyces cerevisiae histidine phosphotransfer signaling protein… | x-ray diffraction | A | PO4 | 1 (best 0.52) |
| 5KBX | Co-crystal structure of the saccharomyces cerevisiae histidine phosphotransfer signaling protein… | x-ray diffraction | A | PO4 | 1 (best 0.53) |
| 6M7W | Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for… | x-ray diffraction | A | — | — |
| 6M7W | Role of the highly conserved G68 residue in the yeast phosphorelay protein YPD1: implications for… | x-ray diffraction | A | — | — |
| Q07688 | AlphaFold monomer V2.0 prediction for phosphorelay intermediate protein YPD1 (Q07688) | predicted | A | — | — |
Ligands
Experiment against prediction
- 1QSP chain A against the predicted model Q07688: TM-score 0.99, RMSD 0.35 Å
- 1QSP chain A against the predicted model Q07688: TM-score 0.99, RMSD 0.35 Å
- 1C02 chain A against the predicted model Q07688: TM-score 0.99, RMSD 0.62 Å
- 1C02 chain A against the predicted model Q07688: TM-score 0.99, RMSD 0.62 Å
- 1OXK chain A against the predicted model Q07688: TM-score 0.99, RMSD 0.52 Å
- 1OXK chain A against the predicted model Q07688: TM-score 0.99, RMSD 0.52 Å
- 5KBX chain A against the predicted model Q07688: TM-score 0.99, RMSD 0.57 Å
- 5KBX chain A against the predicted model Q07688: TM-score 0.99, RMSD 0.57 Å
- 1C03 chain A against the predicted model Q07688: TM-score 0.98, RMSD 0.71 Å
- 1C03 chain A against the predicted model Q07688: TM-score 0.98, RMSD 0.71 Å
Elsewhere
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