MolNFT v1 · #25551 · protein
Native human PCNA
1VYM · Proliferating cell nuclear antigen: “Native human PCNA”. X-ray diffraction, 4 pockets (best druggability 0.37). MolNFT v1 #25551 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1VYM
- Type
- protein
- Length
- 765 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Proliferating cell nuclear antigen
- UniProt
- P12004
- Pockets
- 4 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Proliferating cell nuclear antigen | protein | 255 | 17% helix, 45% strand | P12004 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.37 | 0.77 | 20 | empty |
| 2 | 78 | 0.36 | 0.76 | 16 | empty |
| 3 | 57 | 0.34 | 0.78 | 21 | empty |
| 4 | 72 | 0.32 | 0.74 | 18 | empty |
Interfaces
3 interfaces between chains.
- A–B · 781 Ų buried · 13 hydrogen bonds · protein-protein
- A–C · 776 Ų buried · 16 hydrogen bonds · protein-protein
- B–C · 684 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 1VYM · Native human PCNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12004
- Elsewhere: RCSB PDB 1VYM · PDBe 1VYM · UniProt P12004
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