MolNFT v1 · #25505 · DNA

At base pairs are less stable than gc base pairs in Z-DNA: the crystal structure of D(M(5)CGTAM(5)CG)

1VTW · DNA (5'-D(*(CH3)CP*GP*TP*AP*(CH3)CP*G)-3'): “At base pairs are less stable than gc base pairs in Z-DNA: the crystal structure of D(M(5)CGTAM(5)CG)”. X-ray diffraction. MolNFT v1 #25505 on GenesisL1: 3D structure, binding sites and…

PDB: 1VTW
Type: DNA
Length: 12 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*(CH3)CP*GP*TP*AP*(CH3)CP*G)-3')

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D((CH3)CPGPTPAP(CH3)CPG)-3')	dna	6	—	—

Interfaces

1 interface between chains.

A–B · 342 Å² buried · 19 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 4 modified (nucleotide modification).

Compared structures

1VTW · AT Base Pairs Are Less Stable than GC Base Pairs in Z-DNA: The Crystal Structure of… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1VTW · PDBe 1VTW

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