MolNFT v1 · #25462 · protein
Asv integrase core domain with MG(II) cofactor and hepes ligand, high mg concentration form
1VSD: “Asv integrase core domain with MG(II) cofactor and hepes ligand, high mg concentration form”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #25462 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1VSD
- Type
- protein
- Length
- 146 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Integrase
- UniProt
- P03354
- Ligands
- MG
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Integrase | protein | 146 | 47% helix, 18% strand | P03354 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 1VSD · Asv integrase core domain with MG(II) cofactor and hepes ligand, high mg concentration… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03354
- Elsewhere: RCSB PDB 1VSD · PDBe 1VSD · UniProt P03354
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