MolNFT v1 · #25365 · protein

X-ray crystal structure of tartronate semialdehyde reductase [salmonella typhimurium LT2]

1VPD: “X-ray crystal structure of tartronate semialdehyde reductase [salmonella typhimurium LT2]”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.70). MolNFT v1 #25365 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 1VPD
Type: protein
Length: 294 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tartronate semialdehyde reductase
UniProt: Q8ZLV8
Ligands: CL
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 55% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tartronate semialdehyde reductase	protein	294	55% helix, 14% strand	Q8ZLV8

Ligands and binding sites

CL · Chloride ion · ion · chains A
TLA · L(+)-tartaric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	434	0.70	0.81	58	TLA

Modifications

Observed in the structure: 15 modified (engineered).

Compared structures

1VPD · X-Ray Crystal Structure of Tartronate Semialdehyde Reductase [Salmonella Typhimurium LT2] · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8ZLV8
Elsewhere: RCSB PDB 1VPD · PDBe 1VPD · UniProt Q8ZLV8

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