MolNFT v1 · #2504 · protein
Molecular and active-site structure of a bacillus (1-3,1-4)-beta- glucanase
1BYH · Hybrid: “Molecular and active-site structure of a bacillus (1-3,1-4)-beta- glucanase”. X-ray diffraction, 3 ligands (NBU, BGC, CA), 1 pocket (best druggability 0.47). MolNFT v1 #2504 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1BYH
- Type
- protein
- Length
- 214 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hybrid
- EC
- 3.2.1.73
- Ligands
- NBU, BGC, CA
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hybrid (EC 3.2.1.73) | protein | 214 | 3% helix, 53% strand | — |
Ligands and binding sites
- NBU · N-butane · ligand · chains A
- BGC · beta-D-glucopyranose · sugar · 2 copies · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 168 | 0.47 | 0.76 | 24 | BGC, NBU |
Modifications
Observed in the structure: 1 covalent, 1 disulfide (covalent ligand, disulfide).
Compared structures
- 1BYH · Molecular and active-site structure of a bacillus (1-3,1-4)-beta-glucanase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1BYH · PDBe 1BYH
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