MolNFT v1 · #24867 · protein

Crystal structure of ribosomal protein L27 from thermus thermophilus HB8

1V8Q · TT0826: “Crystal structure of ribosomal protein L27 from thermus thermophilus HB8”. X-ray diffraction, 1 pocket (best druggability 0.43). MolNFT v1 #24867 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1V8Q
Type: protein
Length: 264 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TT0826
UniProt: P84123
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	TT0826	protein	66	5% helix, 45% strand	P84123

Ligands and binding sites

DTT · 2,3-dihydroxy-1,4-dithiobutane · additive · chains A, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	172	0.43	0.74	20	empty

Interfaces

4 interfaces between chains.

A–B · 481 Å² buried · 4 hydrogen bonds · protein-protein
C–D · 452 Å² buried · 3 hydrogen bonds · protein-protein
A–D · 323 Å² buried · 3 hydrogen bonds · protein-protein
A–C · 56 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

1V8Q · Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P84123
Elsewhere: RCSB PDB 1V8Q · PDBe 1V8Q · UniProt P84123

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