MolNFT v1 · #23805 · protein

Msreca-atpgs complex

1UBF: “Msreca-atpgs complex”. X-ray diffraction, 1 ligand (AGS), 4 pockets (best druggability 0.49). MolNFT v1 #23805 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1UBF
Type: protein
Length: 311 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Reca
UniProt: Q59560
Ligands: AGS
Pockets: 4 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Reca	protein	311	34% helix, 20% strand	Q59560

Ligands and binding sites

AGS · Phosphothiophosphoric acid-adenylate ester · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	182	0.49	0.77	40	empty
2	182	0.47	0.75	32	AGS
3	68	0.28	0.73	18	empty
4	52	0.26	0.73	17	empty

Compared structures

1UBF · MsREcA-ATPgS complex · the same entry in another collection · chain A against A, TM-score 1.00
Q59560 · AlphaFold monomer V2.0 prediction for protein reca (Q59560) · a predicted model of the same protein · chain A against A, TM-score 0.87

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q59560
Elsewhere: RCSB PDB 1UBF · PDBe 1UBF · UniProt Q59560

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