MolNFT v1 · #22588 · protein
X-ray crystal structure of phzg from pseudomonas aeruginosa
1T9M · Probable pyridoxamine 5'-phosphate oxidase: “X-ray crystal structure of phzg from pseudomonas aeruginosa”. X-ray diffraction, 2 ligands (FMN, SO4), 5 pockets (best druggability 0.76). MolNFT v1 #22588 on GenesisL1: 3D structure…
- PDB
- 1T9M
- Type
- protein
- Length
- 408 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable pyridoxamine 5'-phosphate oxidase
- UniProt
- O69755
- Ligands
- FMN, SO4
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Probable pyridoxamine 5'-phosphate oxidase | protein | 204 | 26% helix, 37% strand | O69755 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
- ACY · Acetic acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 484 | 0.76 | 0.85 | 45 | FMN |
| 2 | 566 | 0.76 | 0.83 | 55 | FMN |
| 3 | 70 | 0.40 | 0.80 | 15 | empty |
| 4 | 53 | 0.30 | 0.76 | 14 | empty |
| 5 | 60 | 0.30 | 0.75 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 2780 Ų buried · 60 hydrogen bonds · protein-protein
Compared structures
- 1T9M · X-ray crystal structure of phzG from pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O69755
- Elsewhere: RCSB PDB 1T9M · PDBe 1T9M · UniProt O69755
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