MolNFT v1 · #22584 · protein
The crystal structure of yloq, a circularly permuted GTPase.
1T9H · Probable GTPase engc: “The crystal structure of yloq, a circularly permuted GTPase.”. X-ray diffraction, 3 ligands (IUM, CA, ZN), 2 pockets (best druggability 0.45). MolNFT v1 #22584 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1T9H
- Type
- protein
- Length
- 287 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable GTPase engc
- EC
- 3.6.1.-
- UniProt
- O34530
- Ligands
- IUM, CA, ZN
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable GTPase engc (EC 3.6.1.-) | protein | 287 | 32% helix, 23% strand | O34530 |
Ligands and binding sites
- IUM · Uranyl (VI) ion · ligand · 8 copies · chains A
- CA · Calcium ion · metal · 4 copies · chains A
- ZN · Zinc ion · metal · chains A
- ACT · Acetate ion · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.45 | 0.77 | 16 | empty |
| 2 | 63 | 0.39 | 0.80 | 16 | empty |
Compared structures
- 1T9H · The crystal structure of YloQ, a circularly permuted GTPase. · the same entry in another collection · chain A against A, TM-score 1.00
- O34530 · AlphaFold monomer V2.0 prediction for small ribosomal subunit biogenesis GTPase rsga… · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34530
- Elsewhere: RCSB PDB 1T9H · PDBe 1T9H · UniProt O34530
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