MolNFT v1 · #22448 · protein
Crystal structure of ribosylglycohydrolase MJ1187 from methanococcus jannaschii
1T5J · Hypothetical protein MJ1187: “Crystal structure of ribosylglycohydrolase MJ1187 from methanococcus jannaschii”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.49). MolNFT v1 #22448 on GenesisL1: 3D structure…
- PDB
- 1T5J
- Type
- protein
- Length
- 301 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein MJ1187
- UniProt
- Q58588
- Ligands
- MG
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 65% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein MJ1187 | protein | 301 | 65% helix, 3% strand | Q58588 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.49 | 0.83 | 20 | MG |
Compared structures
- 1T5J · Crystal structure of ribosylglycohydrolase MJ1187 from Methanococcus jannaschii · the same entry in another collection · chain A against A, TM-score 1.00
- Q58588 · AlphaFold monomer V2.0 prediction for uncharacterized protein MJ1187 (Q58588) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58588
- Elsewhere: RCSB PDB 1T5J · PDBe 1T5J · UniProt Q58588
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