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Crystal structure of ribosylglycohydrolase MJ1187 from methanococcus jannaschii

Analyse Crystal structure of ribosylglycohydrolase MJ1187 from methanococcus jannaschii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1T5J
Type: protein
Length: 301 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein MJ1187
UniProt: Q58588
Ligands: MG
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein MJ1187	protein	301	65% helix, 3% strand	Q58588

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.49	0.83	20	MG

Compared structures

1T5J · Crystal structure of ribosylglycohydrolase MJ1187 from Methanococcus jannaschii · the same entry in another collection · chain A against A, TM-score 1.00
Q58588 · AlphaFold monomer V2.0 prediction for uncharacterized protein MJ1187 (Q58588) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58588
Elsewhere: RCSB PDB 1T5J · PDBe 1T5J · UniProt Q58588

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