MolNFT v1 · #22142 · protein

Core-streptavidin mutant W79F at pH 4.5

1SWH: “Core-streptavidin mutant W79F at pH 4.5”. X-ray diffraction, 4 pockets (best druggability 0.62). MolNFT v1 #22142 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1SWH
Type: protein
Length: 459 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Core-streptavidin
UniProt: P22629
Pockets: 4 · best druggability 0.62

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Core-streptavidin	protein	114	5% helix, 60% strand	P22629
B, C, D	Core-streptavidin	protein	115	8% helix, 57% strand	P22629

Pockets

4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	311	0.62	0.79	42	empty
2	313	0.61	0.79	35	empty
3	244	0.61	0.80	34	empty
4	312	0.59	0.78	37	empty

Interfaces

6 interfaces between chains.

C–D · 1663 Å² buried · 21 hydrogen bonds · protein-protein
A–B · 1614 Å² buried · 26 hydrogen bonds · protein-protein
A–D · 415 Å² buried · 2 hydrogen bonds · protein-protein
B–C · 389 Å² buried · 3 hydrogen bonds · protein-protein
A–C · 198 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

1SWH · Core-streptavidin mutant W79F at pH 4.5 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P22629
Elsewhere: RCSB PDB 1SWH · PDBe 1SWH · UniProt P22629

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