MolNFT v1 · #22124 · protein

Severin domain 2, 1.75 ångström crystal structure

1SVY: “Severin domain 2, 1.75 ångström crystal structure”. X-ray diffraction, 2 ligands (CA, NA). MolNFT v1 #22124 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1SVY
Type: protein
Length: 102 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Severin
UniProt: P10733
Ligands: CA, NA

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Severin	protein	102	25% helix, 29% strand	P10733

Ligands and binding sites

CA · Calcium ion · metal · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 modified (oxidation).

Compared structures

1SVY · Severin domain 2, 1.75 ångström crystal structure · the same entry in another collection · chain A against A, TM-score 1.00
P10733 · AlphaFold monomer V2.0 prediction for severin (P10733) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P10733
Elsewhere: RCSB PDB 1SVY · PDBe 1SVY · UniProt P10733

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