MolNFT v1 · #21752 · protein

Crystal structure of the streptomyces K15 dd-transpeptidase

1SKF · D-alanyl-D-alanine transpeptidase: “Crystal structure of the streptomyces K15 dd-transpeptidase”. X-ray diffraction, 1 pocket (best druggability 0.39). MolNFT v1 #21752 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1SKF
Type: protein
Length: 262 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D-alanyl-D-alanine transpeptidase
EC: 3.4.16.4
UniProt: P39042
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D-alanyl-D-alanine transpeptidase (EC 3.4.16.4)	protein	262	38% helix, 23% strand	P39042

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	100	0.39	0.77	31	empty

Compared structures

1SKF · Crystal structure of the streptomyces K15 dd-transpeptidase · the same entry in another collection · chain A against A, TM-score 1.00
P39042 · AlphaFold monomer V2.0 prediction for D-alanyl-D-alanine carboxypeptidase (P39042) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P39042
Elsewhere: RCSB PDB 1SKF · PDBe 1SKF · UniProt P39042

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