Research workbench
Crystal structure of the streptomyces K15 dd-transpeptidase
Analyse Crystal structure of the streptomyces K15 dd-transpeptidase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1SKF
- Type
- protein
- Length
- 262 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-alanyl-D-alanine transpeptidase
- EC
- 3.4.16.4
- UniProt
- P39042
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-alanyl-D-alanine transpeptidase (EC 3.4.16.4) | protein | 262 | 38% helix, 23% strand | P39042 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.39 | 0.77 | 31 | empty |
Compared structures
- 1SKF · Crystal structure of the streptomyces K15 dd-transpeptidase · the same entry in another collection · chain A against A, TM-score 1.00
- P39042 · AlphaFold monomer V2.0 prediction for D-alanyl-D-alanine carboxypeptidase (P39042) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39042
- Elsewhere: RCSB PDB 1SKF · PDBe 1SKF · UniProt P39042
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