MolNFT v1 · #21531 · protein

1.65 a structure of escherichia COLI ycfc gene product

1SDI · Hypothetical protein ycfc: “1.65 a structure of escherichia COLI ycfc gene product”. X-ray diffraction, 2 pockets (best druggability 0.43). MolNFT v1 #21531 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1SDI
Type: protein
Length: 213 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein ycfc
UniProt: P25746
Pockets: 2 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein ycfc	protein	213	74% helix, 0% strand	P25746

Ligands and binding sites

ACY · Acetic acid · additive · 2 copies · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	138	0.43	0.75	21	empty
2	75	0.34	0.75	20	ACY

Compared structures

1SDI · 1.65 A structure of Escherichia coli ycfC gene product · the same entry in another collection · chain A against A, TM-score 1.00
P25746 · AlphaFold monomer V2.0 prediction for high frequency lysogenization protein hfld (P25746) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P25746
Elsewhere: RCSB PDB 1SDI · PDBe 1SDI · UniProt P25746

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.