MolNFT v1 · #21220 · protein
Crystal structure of tgt in complex with 2-aminoquinazolin-4(3H)-one
1S39 · TRNA guanine transglycosylase: “Crystal structure of tgt in complex with 2-aminoquinazolin-4(3H)-one”. X-ray diffraction, 2 ligands (AQO, ZN), 2 pockets (best druggability 0.58). MolNFT v1 #21220 on GenesisL1: 3D structure, binding…
- PDB
- 1S39
- Type
- protein
- Length
- 366 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA guanine transglycosylase
- EC
- 2.4.2.29
- UniProt
- P28720
- Ligands
- AQO, ZN
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA guanine transglycosylase (EC 2.4.2.29) | protein | 366 | 46% helix, 20% strand | P28720 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 223 | 0.58 | 0.80 | 37 | AQO |
| 2 | 63 | 0.36 | 0.78 | 12 | empty |
Compared structures
- 1S39 · CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2-aminoquinazolin-4(3H)-one · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28720
- Elsewhere: RCSB PDB 1S39 · PDBe 1S39 · UniProt P28720
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