MolNFT v1 · #20618 · protein

The apo form of E. COLI ribokinase

1RKA · Protein (ribokinase): “The apo form of E. COLI ribokinase”. X-ray diffraction, 3 pockets (best druggability 0.61). MolNFT v1 #20618 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1RKA
Type: protein
Length: 305 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (ribokinase)
EC: 2.7.1.15
UniProt: P0A9J6
Pockets: 3 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (ribokinase) (EC 2.7.1.15)	protein	305	38% helix, 25% strand	P0A9J6

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	354	0.61	0.77	41	empty
2	67	0.39	0.79	17	empty
3	69	0.34	0.76	14	empty

Compared structures

1RKA · The apo form of E. COLI ribokinase · the same entry in another collection · chain A against A, TM-score 1.00
P0A9J6 · AlphaFold monomer V2.0 prediction for ribokinase (P0A9J6) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A9J6
Elsewhere: RCSB PDB 1RKA · PDBe 1RKA · UniProt P0A9J6

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