MolNFT v1 · #20241 · protein
The structure of endo-beta-1,4-galactanase from bacillus licheniformis
1R8L: “The structure of endo-beta-1,4-galactanase from bacillus licheniformis”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.67). MolNFT v1 #20241 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1R8L
- Type
- protein
- Length
- 773 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-beta-1,4-galactanase
- EC
- 3.2.1.89
- UniProt
- Q65CX5
- Ligands
- CA
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-beta-1,4-galactanase (EC 3.2.1.89) | protein | 386 | 38% helix, 15% strand | Q65CX5 |
| B | Endo-beta-1,4-galactanase (EC 3.2.1.89) | protein | 387 | 38% helix, 15% strand | Q65CX5 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 366 | 0.67 | 0.80 | 35 | empty |
| 2 | 354 | 0.65 | 0.80 | 37 | empty |
| 3 | 534 | 0.61 | 0.75 | 50 | empty |
Interfaces
1 interface between chains.
- A–B · 187 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1R8L · The structure of endo-beta-1,4-galactanase from Bacillus licheniformis · the same entry in another collection · chain A against A, TM-score 1.00
- Q65CX5 · AlphaFold monomer V2.0 prediction for endo-beta-1,4-galactanase (Q65CX5) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q65CX5
- Elsewhere: RCSB PDB 1R8L · PDBe 1R8L · UniProt Q65CX5
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