MolNFT v1 · #19955 · protein

Crystal structure of the complete core of archaeal srp and implications for inter-domain communication

1QZX · Signal recognition 54 kda protein: “Crystal structure of the complete core of archaeal srp and implications for inter-domain communication”. X-ray diffraction, 11 pockets (best druggability 0.78). MolNFT v1 #19955 on GenesisL1: 3D…

PDB: 1QZX
Type: protein
Length: 850 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Signal recognition 54 kda protein
UniProt: Q97ZE7
Pockets: 11 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 55% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Signal recognition 54 kda protein	protein	425	55% helix, 10% strand	Q97ZE7

Pockets

11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	950	0.78	0.80	97	empty
2	1176	0.77	0.79	109	empty
3	885	0.70	0.75	72	empty
4	144	0.59	0.84	24	empty
5	130	0.49	0.79	23	empty

Interfaces

1 interface between chains.

A–B · 2092 Å² buried · 40 hydrogen bonds · protein-protein

Compared structures

1QZX · Crystal structure of the complete core of archaeal SRP and implications for inter-domain… · the same entry in another collection · chain A against A, TM-score 1.00
Q97ZE7 · AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein (Q97ZE7) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q97ZE7
Elsewhere: RCSB PDB 1QZX · PDBe 1QZX · UniProt Q97ZE7

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