Research workbench
Crystal structure of the complete core of archaeal srp and implications for inter-domain communication
Analyse Crystal structure of the complete core of archaeal srp and implications for… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QZX
- Type
- protein
- Length
- 850 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Signal recognition 54 kda protein
- UniProt
- Q97ZE7
- Pockets
- 11 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Signal recognition 54 kda protein | protein | 425 | 55% helix, 10% strand | Q97ZE7 |
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 950 | 0.78 | 0.80 | 97 | empty |
| 2 | 1176 | 0.77 | 0.79 | 109 | empty |
| 3 | 885 | 0.70 | 0.75 | 72 | empty |
| 4 | 144 | 0.59 | 0.84 | 24 | empty |
| 5 | 130 | 0.49 | 0.79 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 2092 Ų buried · 40 hydrogen bonds · protein-protein
Compared structures
- 1QZX · Crystal structure of the complete core of archaeal SRP and implications for inter-domain… · the same entry in another collection · chain A against A, TM-score 1.00
- Q97ZE7 · AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein (Q97ZE7) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97ZE7
- Elsewhere: RCSB PDB 1QZX · PDBe 1QZX · UniProt Q97ZE7
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