MolNFT v1 · #19709 · protein
Crystal structure of the 70 kda soluble lytic transglycosylase SLT70 from escherichia COLI at 1.65 ångströms resolution
1QSA · Protein (soluble lytic transglycosylase SLT70): “Crystal structure of the 70 kda soluble lytic transglycosylase SLT70 from escherichia COLI at 1.65 ångströms…”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.52).…
- PDB
- 1QSA
- Type
- protein
- Length
- 618 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (soluble lytic transglycosylase SLT70)
- EC
- 3.2.1.-
- UniProt
- P03810
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (soluble lytic transglycosylase SLT70) (EC 3.2.1.-) | protein | 618 | 70% helix, 0% strand | P03810 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 13 copies · chains A
- GOL · Glycerol · additive · 7 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.52 | 0.79 | 28 | empty |
| 2 | 79 | 0.35 | 0.76 | 16 | empty |
| 3 | 91 | 0.35 | 0.74 | 16 | SO4, GOL |
| 4 | 56 | 0.29 | 0.74 | 16 | GOL |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1QSA · Crystal structure of the 70 kda soluble lytic transglycosylase SLT70 from escherichia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03810
- Elsewhere: RCSB PDB 1QSA · PDBe 1QSA · UniProt P03810
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