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Crystal structure of the 70 kda soluble lytic transglycosylase SLT70 from escherichia COLI at 1.65 ångströms resolution
Analyse Crystal structure of the 70 kda soluble lytic transglycosylase SLT70 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QSA
- Type
- protein
- Length
- 618 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (soluble lytic transglycosylase SLT70)
- EC
- 3.2.1.-
- UniProt
- P03810
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (soluble lytic transglycosylase SLT70) (EC 3.2.1.-) | protein | 618 | 70% helix, 0% strand | P03810 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 13 copies · chains A
- GOL · Glycerol · additive · 7 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.52 | 0.79 | 28 | empty |
| 2 | 79 | 0.35 | 0.76 | 16 | empty |
| 3 | 91 | 0.35 | 0.74 | 16 | SO4, GOL |
| 4 | 56 | 0.29 | 0.74 | 16 | GOL |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1QSA · Crystal structure of the 70 kda soluble lytic transglycosylase SLT70 from escherichia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03810
- Elsewhere: RCSB PDB 1QSA · PDBe 1QSA · UniProt P03810
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