MolNFT v1 · #191560 · protein + DNA
DNA polymerase beta (E.C.2.7.7.7)/DNA complex + 2'- deoxyadenosine-5'-triphosphate, soaked in the presence of datp and ZNCL2
9ICF: “DNA polymerase beta (E.C.2.7.7.7)/DNA complex + 2'- deoxyadenosine-5'-triphosphate, soaked in the presence of…”. X-ray diffraction, 3 ligands (DTP, ZN, NA). MolNFT v1 #191560 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 9ICF
- Type
- protein + DNA
- Length
- 342 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P06746
- Ligands
- DTP, ZN, NA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| T | — | dna | 7 | — | — |
| P | — | dna | 8 | — | — |
| A | — | protein | 327 | — | P06746 |
Ligands and binding sites
- DTP · 2'-deoxyadenosine 5'-triphosphate · ligand · chains P, A
- ZN · Zinc ion · metal · 2 copies · chains P, A
- NA · Sodium ion · metal · 2 copies · chains P, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 9ICF · DNA polymerase beta (E.C.2.7.7.7)/DNA complex + 2'-deoxyadenosine-5'-triphosphate, soaked… · the same entry in another collection · chain T against T, TM-score 1.00
- P06746 · AlphaFold monomer V2.0 prediction for DNA polymerase beta (P06746) · a predicted model of the same protein · chain A against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06746
- Elsewhere: RCSB PDB 9ICF · PDBe 9ICF · UniProt P06746
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