MolNFT v1 · #191530 · protein
Refinement of rubredoxin from desulfovibrio vulgaris at 1.0 ångströms with and without restraints
8RXN: “Refinement of rubredoxin from desulfovibrio vulgaris at 1.0 ångströms with and without restraints”. X-ray diffraction, 2 ligands (FE, SO4). MolNFT v1 #191530 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8RXN
- Type
- protein
- Length
- 52 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rubredoxin
- UniProt
- P00269
- Ligands
- FE, SO4
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rubredoxin | protein | 52 | 17% helix, 23% strand | P00269 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 8RXN · Refinement of rubredoxin from desulfovibrio vulgaris at 1.0 ångströms with and without… · the same entry in another collection · chain A against A, TM-score 1.00
- P00269 · AlphaFold monomer V2.0 prediction for rubredoxin (P00269) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00269
- Elsewhere: RCSB PDB 8RXN · PDBe 8RXN · UniProt P00269
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