MolNFT v1 · #191449 · protein
Crystal structure of a putative D-beta-hydroxybutyrate dehydrogenase from burkholderia cenocepacia J2315 in complex with NAD
8DT1: “Crystal structure of a putative D-beta-hydroxybutyrate dehydrogenase from burkholderia cenocepacia J2315 in…”. X-ray diffraction, 2 ligands (NAD, PO4). MolNFT v1 #191449 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8DT1
- Type
- protein
- Length
- 1,012 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1V2Y0M0
- Ligands
- NAD, PO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 251 | — | A0A1V2Y0M0 |
| B, D | — | protein | 251 | — | A0A1V2Y0M0 |
| C | — | protein | 259 | — | A0A1V2Y0M0 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 4 copies · chains A, B, C, D
- PO4 · Phosphate ion · ion · chains A
- PG4 · Tetraethylene glycol · additive · 8 copies · chains A, B, C, D
- CIT · Citric acid · additive · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 8DT1 · Crystal Structure of a Putative D-beta-hydroxybutyrate dehydrogenase from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1V2Y0M0
- Elsewhere: RCSB PDB 8DT1 · PDBe 8DT1 · UniProt A0A1V2Y0M0
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