MolNFT v1 · #191395 · protein
Ternary complex of SUMO1 with a phosphomimetic sim of pml and zinc
8DJH · Small ubiquitin-related modifier 1: “Ternary complex of SUMO1 with a phosphomimetic sim of pml and zinc”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #191395 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8DJH
- Type
- protein
- Length
- 105 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Small ubiquitin-related modifier 1; Pml 4SD
- UniProt
- P63165
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 24% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Small ubiquitin-related modifier 1 | protein | 85 | 29% helix, 29% strand | P63165 |
| B | Pml 4SD | protein | 20 | 0% helix, 15% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 939 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 8DJH · Ternary complex of SUMO1 with a phosphomimetic SIM of PML and zinc · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63165
- Elsewhere: RCSB PDB 8DJH · PDBe 8DJH · UniProt P63165
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