MolNFT v1 · #190976 · protein
Cryoem structure of SARS-cov-2 spike monomer in complex with neutralising antibody P008_60
7ZBU: “Cryoem structure of SARS-cov-2 spike monomer in complex with neutralising antibody P008_60”. Electron microscopy, 2 ligands (3Q9, NAG). MolNFT v1 #190976 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7ZBU
- Type
- protein
- Length
- 1,074 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- 3Q9, NAG
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 660 | — | P0DTC2 |
| H | — | protein | 222 | — | — |
| L | — | protein | 192 | — | — |
Ligands and binding sites
- 3Q9 · 3-[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl) methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7ZBU · CryoEM structure of SARS-CoV-2 spike monomer in complex with neutralising antibody P008_60 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7ZBU · PDBe 7ZBU · UniProt P0DTC2
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