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MolNFT v1 · #190904 · protein

The molybdenum storage protein loaded with tungstate

7Z5J: “The molybdenum storage protein loaded with tungstate”. Electron microscopy, 9 ligands (ATP, IWL, IV9). MolNFT v1 #190904 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7Z5J
Type
protein
Length
3,234 residues
Chains
12
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P84253, P84308
Ligands
ATP, IWL, IV9, IWO, IWZ, IHW, IX3, MG, MOO

Structure

electron microscopy · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
B, D, F, H, J, L—protein267—P84253
A, C, E, I, G, K—protein272—P84308

Ligands and binding sites

  • ATP · Adenosine-5'-triphosphate · ligand · 12 copies · chains B, A, D, C, F, E, H, I, J, G, L, K
  • IWL · W11-O35 cluster · ligand · 6 copies · chains B, A, D, F, E, H, I, J, G, L, K
  • IV9 · 1,1,3,3,5,7,7,9,11,15,15-undecakis($l^{1}-oxidanyl)-2$L^{4},4$L^{3},6$L^{5},8,10,12,14,16,17,18,19$L^{3}, 20,21,22,23-pentadecaoxa-1$L^{6},3$L^{6},5$L^{6}, 7$L^{6},9$L^{6},11$L^{6},13$L^{6},15$L^{6}-octatungstapentadecacyclo[7.7.1.1^{1,13}.1^{3,5}.1^{3, 15}.1^{5,7}.1^{5,11}.1^{7,11}.0^{2,13}.0^{2,15}.0^{4, 13}.0^{6,9}.0^{6,11}.0^{6,13}.0^{9,19}]tricosane · ligand · 6 copies · chains B, A, D, C, F, E, H, I, L, J, G, K
  • IWO · W8-O26 cluster · ligand · 6 copies · chains A, C, E, I, G, K
  • IWZ · W10-O37 cluster · ligand · 2 copies · chains A, C, E, I, G, K
  • IHW · tungstate cluster · ligand · 2 copies · chains B, D, F, H, J, L
  • IX3 · W3-O10 cluster · ligand · 2 copies · chains A, C, E, I, G, K
  • MG · Magnesium ion · metal · 12 copies · chains B, A, C, F, E, H, I, J, G, L, K
  • MOO · Molybdate ion · ion · 6 copies · chains B, D, F, H, J, L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7Z5J · The molybdenum storage protein loaded with tungstate · the same entry in another collection · chain K against K, TM-score 1.00

Analyse

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