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The molybdenum storage protein loaded with tungstate

Analyse The molybdenum storage protein loaded with tungstate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7Z5J
Type
protein
Length
3,234 residues
Chains
12
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P84253, P84308
Ligands
ATP, IWL, IV9, IWO, IWZ, IHW, IX3, MG, MOO

Structure

electron microscopy · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
B, D, F, H, J, L—protein267—P84253
A, C, E, I, G, K—protein272—P84308

Ligands and binding sites

  • ATP · Adenosine-5'-triphosphate · ligand · 12 copies · chains B, A, D, C, F, E, H, I, J, G, L, K
  • IWL · W11-O35 cluster · ligand · 6 copies · chains B, A, D, F, E, H, I, J, G, L, K
  • IV9 · 1,1,3,3,5,7,7,9,11,15,15-undecakis($l^{1}-oxidanyl)-2$L^{4},4$L^{3},6$L^{5},8,10,12,14,16,17,18,19$L^{3}, 20,21,22,23-pentadecaoxa-1$L^{6},3$L^{6},5$L^{6}, 7$L^{6},9$L^{6},11$L^{6},13$L^{6},15$L^{6}-octatungstapentadecacyclo[7.7.1.1^{1,13}.1^{3,5}.1^{3, 15}.1^{5,7}.1^{5,11}.1^{7,11}.0^{2,13}.0^{2,15}.0^{4, 13}.0^{6,9}.0^{6,11}.0^{6,13}.0^{9,19}]tricosane · ligand · 6 copies · chains B, A, D, C, F, E, H, I, L, J, G, K
  • IWO · W8-O26 cluster · ligand · 6 copies · chains A, C, E, I, G, K
  • IWZ · W10-O37 cluster · ligand · 2 copies · chains A, C, E, I, G, K
  • IHW · tungstate cluster · ligand · 2 copies · chains B, D, F, H, J, L
  • IX3 · W3-O10 cluster · ligand · 2 copies · chains A, C, E, I, G, K
  • MG · Magnesium ion · metal · 12 copies · chains B, A, C, F, E, H, I, J, G, L, K
  • MOO · Molybdate ion · ion · 6 copies · chains B, D, F, H, J, L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7Z5J · The molybdenum storage protein loaded with tungstate · the same entry in another collection · chain K against K, TM-score 1.00

Analyse

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