MolNFT v1 · #190786 · protein
Benzoylsuccinyl-CoA thiolase with coenzyme a
7YXM: “Benzoylsuccinyl-CoA thiolase with coenzyme a”. X-ray diffraction, 5 ligands (COA, ZN, MG). MolNFT v1 #190786 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7YXM
- Type
- protein
- Length
- 1,051 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q39VG2, Q39VG1
- Ligands
- COA, ZN, MG, PO4, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 134 | — | Q39VG2 |
| B, D | — | protein | 392 | — | Q39VG1 |
| C | — | protein | 133 | — | Q39VG2 |
Ligands and binding sites
- COA · Coenzyme A · ligand · chains C, D
- ZN · Zinc ion · metal · 2 copies · chains A, C
- MG · Magnesium ion · metal · chains B
- PO4 · Phosphate ion · ion · 2 copies · chains B, D
- CL · Chloride ion · ion · chains D
- PE8 · 3,6,9,12,15,18,21-heptaoxatricosane-1,23-diol · additive · 4 copies · chains A, B, C, D
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7YXM · Benzoylsuccinyl-CoA thiolase with coenzyme A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39VG2
- Every structure of UniProt Q39VG1
- Elsewhere: RCSB PDB 7YXM · PDBe 7YXM · UniProt Q39VG2 · UniProt Q39VG1
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