MolNFT v1 · #190782 · protein
Drosophila melanogaster JMJD7 (DMJMJD7) in complex with mn and N- oxalylglycine (nog)
7YXI: “Drosophila melanogaster JMJD7 (DMJMJD7) in complex with mn and N- oxalylglycine (nog)”. X-ray diffraction, 3 ligands (OGA, MN, SO4). MolNFT v1 #190782 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7YXI
- Type
- protein
- Length
- 624 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9VU77
- Ligands
- OGA, MN, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 312 | — | Q9VU77 |
| B | — | protein | 312 | — | Q9VU77 |
Ligands and binding sites
- OGA · N-oxalylglycine · ligand · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7YXI · Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and N-oxalylglycine (NOG) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VU77
- Elsewhere: RCSB PDB 7YXI · PDBe 7YXI · UniProt Q9VU77
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