MolNFT v1 · #190766 · protein
Monocot chimeric jacalin JAC1 from oryza sativa: dirigent domain with bound galactobiose
7YWF: “Monocot chimeric jacalin JAC1 from oryza sativa: dirigent domain with bound galactobiose”. X-ray diffraction, 2 ligands (GAL, PO4). MolNFT v1 #190766 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7YWF
- Type
- protein
- Length
- 432 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q306J3
- Ligands
- GAL, PO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 138 | — | Q306J3 |
| B | — | protein | 152 | — | Q306J3 |
| C | — | protein | 142 | — | Q306J3 |
Ligands and binding sites
- GAL · beta-D-galactopyranose · sugar · 6 copies · chains A, B, C
- PO4 · Phosphate ion · ion · chains B
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
- DTU · (2R,3S)-1,4-dimercaptobutane-2,3-diol · additive · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7YWF · Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain with bound galactobiose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q306J3
- Elsewhere: RCSB PDB 7YWF · PDBe 7YWF · UniProt Q306J3
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