MolNFT v1 · #190627 · protein
SARS-cov-2 omicron BA.1 variant spike trimer with two mouse ACE2 bound
7XO4: “SARS-cov-2 omicron BA.1 variant spike trimer with two mouse ACE2 bound”. Electron microscopy, 2 ligands (NAG, ZN). MolNFT v1 #190627 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7XO4
- Type
- protein
- Length
- 4,252 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2, Q8R0I0
- Ligands
- NAG, ZN
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 1024 | — | P0DTC2 |
| C | — | protein | 1022 | — | P0DTC2 |
| D, E | — | protein | 591 | — | Q8R0I0 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 39 copies · chains A, B, C, D, E
- ZN · Zinc ion · metal · 2 copies · chains D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7XO4 · SARS-CoV-2 Omicron BA.1 Variant Spike Trimer with two mouse ACE2 Bound · the same entry in another collection · chain B against B, TM-score 1.00
- Q8R0I0 · AlphaFold monomer V2.0 prediction for angiotensin-converting enzyme 2 (Q8R0I0) · a predicted model of the same protein · chain E against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Every structure of UniProt Q8R0I0
- Elsewhere: RCSB PDB 7XO4 · PDBe 7XO4 · UniProt P0DTC2 · UniProt Q8R0I0
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